Patologia molecolare dello splicing del precursore dell’mRNA. Aspetti di base e diagnostici
- 3 Anni 2002/2005
 - 139.665€ Totale Fondi
 
Dal sequenziamento del genoma umano e’ risultato chiaro che circa un terzo dei geni possono codificare numerose e diverse proteine mediante lo splicing alternativo dell mRNA, un meccanismo di base implicato nel controllo della espressione genica e nella diversita’ genomica. Poiche’ la regolazione di questo processo e’ intrinsecamente complessa e’ anche suscettibile di variazioni patologiche. Circa il 40 % di mutazioni a carico del DNA associate a malattie ereditarie causano un difetto nello splicing dell’mRNA. Tuttavia la associazione tra una mutazione ed il suo effetto sullo splicing puo non essere ovvia, in quanto le nostre conoscenze sul meccanismo di base che regola lo splicing sono limitate. In particolare mediante screening a tappeto di geni implicati in patologie ereditarie vengono continuamente identificate mutazioni di splicing "orfane", la cui associazione con la patologia non e’ chiara. Frequentemente queste mutazioni vengono ritrovate sia in pazienti affetti che in soggetti sani oppure in pazienti con un interessamento patologico variabile. In questa proposta noi intendiamo sviluppare un sistema che permetta una identificazione ed uno studio dettagliato delle mutazioni di splicing "orfane". Inoltre intendiamo studiare dettagliatamente alcune mutazioni di splicing precedentemente identificate nella Fibrosi Cistica, nell’Atassia-Teleangectasia e nell’Omocistinuria. La caratterizzazione molecolare dei meccanismi di base implicati nello splicing patologico permetteranno lo sviluppo di strategie terapeutiche mirate.
Pubblicazioni Scientifiche
- 2004-06-01 AMERICAN JOURNAL OF HUMAN GENETICS 
Nuclear factor TDP-43 binds to the polymorphic TG repeats in CFTR intron 8 and causes skipping of Exon 9: A functional link with disease penetrance
 - 2008-07-01 BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE 
Thrombopoietin and its splicing variants: Structure and functions in thrombopoiesis and beyond
 - 2006-02-01 FEBS LETTERS 
TDP43 depletion rescues aberrant CFTR exon 9 skipping
 - 2006-08-07 FEBS LETTERS 
NF1 mRNA biogenesis:: Effect of the genomic milieu in splicing regulation of the NF1 exon 37 region
 - 2004-01-07 GENE 
Alternative splicing of fibronectin:: a mouse model demonstrates the identity of in vitro and in vivo systems and the processing autonomy of regulated exons in adult mice
 - 2003-05-15 HUMAN MOLECULAR GENETICS 
New type of disease causing mutations: the example of the composite exonic regulatory elements of splicing in CFTR exon 12
 - 2003-01-17 JOURNAL OF BIOLOGICAL CHEMISTRY 
Promoter architecture modulates CFTR exon 9 skipping
 - 2003-07-18 JOURNAL OF BIOLOGICAL CHEMISTRY 
Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9
 - 2004-04-23 JOURNAL OF BIOLOGICAL CHEMISTRY 
An intronic polypyrimidine-rich element downstream of the donor site modulates cystic fibrosis transmembrane conductance regulator exon 9 alternative splicing
 - 2004-09-17 JOURNAL OF BIOLOGICAL CHEMISTRY 
An exonic splicing enhancer offsets the atypical GU-rich 3′ splice site of human apolipoprotein A-II exon 3
 - 2005-11-11 JOURNAL OF BIOLOGICAL CHEMISTRY 
TDP-43 binds heterogeneous nuclear ribonucleoprotein A/B through its C-terminal tail - An important region for the inhibition of cystic fibrosis transmembrane conductance regulator exon 9 splicing
 - 2005-05-06 JOURNAL OF MOLECULAR BIOLOGY 
Human, Drosophila, and C-elegans TDP43:: Nucleic acid binding properties and splicing regulatory function
 - 2004-12-01 MOLECULAR AND CELLULAR BIOLOGY 
Influence of RNA secondary structure on the pre-mRNA splicing process
 - 2002-04-01 NATURE GENETICS 
A new type of mutation causes a splicing defect in ATM
 - 2004-05-01 NATURE REVIEWS GENETICS 
Genomic variants in exons and introns: identifying the splicing spoilers
 - 2004-08-01 NUCLEIC ACIDS RESEARCH 
hnRNP H binding at the 5′ splice site correlates with the pathological effect of two intronic mutations in the NF-1 and TSHβ genes
 - 2005-01-01 NUCLEIC ACIDS RESEARCH 
Depletion of TDP 43 overrides the need for exonic and intronic splicing enhancers in the human apoA-II gene (Publication with Expression of Concern. See FEB, 2023)
 - 2006-01-01 NUCLEIC ACIDS RESEARCH 
Defective splicing, disease and therapy: searching for master checkpoints in exon definition
 - 2007-01-01 NUCLEIC ACIDS RESEARCH 
Complex splicing control of the human thrombopoietin gene by intronic G runs
 - 2007-01-01 NUCLEIC ACIDS RESEARCH 
Reduced splicing efficiency induced by synonymous substitutions may generate a substrate for natural selection of new splicing isoforms: the case of CFTR exon 12
 - 2007-01-01 NUCLEIC ACIDS RESEARCH 
Aberrant 5′ splice sites in human disease genes:: mutation pattern, nucleotide structure and comparison of computational tools that predict their utilization
 - 2005-05-03 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 
Synonymous mutations in CFTR exon 12 affect splicing and are not neutral in evolution
 - 2006-06-01 RNA 
Cryptic splice site usage in exon 7 of the human fibrinogen Bβ-chain gene is regulated by a naturally silent SF2/ASF binding site within this exon
 - 2003-06-01 TRENDS IN MOLECULAR MEDICINE 
Can a 'patch' in a skipped exon make the pre-mRNA splicing machine run better?
 - 2005-01-01 TRENDS IN MOLECULAR MEDICINE 
Another step forward for SELEXive splicing